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Natural and Designed Cyclic Peptides as Potential Antiviral Drugs to Combat Future Coronavirus Outbreaks
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Heavy Metals in Particulate Matter—Trends and Impacts on Environment
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Protein O-Fucosyltransferases: Biological Functions and Molecular Mechanisms in Mammals
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Theoretical Insights into the Impact of Pyrrole and Imidazole Substituents on the BODIPY Chromophore
Journal Description
Molecules
Molecules
is the leading international, peer-reviewed, open access journal of chemistry. Molecules is published semimonthly online by MDPI. The International Society of Nucleosides, Nucleotides & Nucleic Acids (IS3NA), the Spanish Society of Medicinal Chemistry (SEQT) and the International Society of Heterocyclic Chemistry (ISHC) are affiliated with Molecules and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, MEDLINE, PMC, Reaxys, CaPlus / SciFinder, MarinLit, AGRIS, and other databases.
- Journal Rank: JCR - Q2 (Biochemistry and Molecular Biology) / CiteScore - Q1 (Organic Chemistry)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 16.1 days after submission; acceptance to publication is undertaken in 2.6 days (median values for papers published in this journal in the first half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
- Sections: published in 25 topical sections.
- Testimonials: See what our editors and authors say about Molecules.
- Companion journal: Foundations.
- Journal Cluster of Chemical Reactions and Catalysis: Catalysts, Chemistry, Electrochem, Inorganics, Molecules, Organics, Oxygen, Photochem, Reactions, Sustainable Chemistry.
Impact Factor:
4.6 (2024);
5-Year Impact Factor:
5.0 (2024)
Latest Articles
Synthesis and Molecular Modeling of Antioxidant and Anti-Inflammatory Five-Membered Heterocycle–Cinnamic Acid Hybrids
Molecules 2025, 30(15), 3148; https://doi.org/10.3390/molecules30153148 (registering DOI) - 27 Jul 2025
Abstract
In this study, the design and synthesis of a novel series of cinnamic acid and 1,2,4-triazole hybrids were reported, aiming to enhance antioxidant and lipoxygenase inhibitory activities through pharmacophore combination. Cinnamic acid derivatives and 1,2,4-triazoles exhibit a broad spectrum of biological activities; therefore,
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In this study, the design and synthesis of a novel series of cinnamic acid and 1,2,4-triazole hybrids were reported, aiming to enhance antioxidant and lipoxygenase inhibitory activities through pharmacophore combination. Cinnamic acid derivatives and 1,2,4-triazoles exhibit a broad spectrum of biological activities; therefore, by synthesizing hybrid molecules, we would like to exploit the beneficial characteristics of each scaffold. The general synthetic procedure comprises three synthetic steps, starting from the reaction of appropriate substituted cinnamic acid with hydrazine monohydrate in acetonitrile with cyclohexane and resulting in the formation of hydrazides. Consequently, the hydrazides reacted with phenylisothiocyanate under microwave irradiation conditions. Then, cyclization proceeded to the 1,2,4-triazole after the addition of NaOH solution and microwave irradiation. All the synthesized derivatives have been studied for their ability (a) to interact with the free radical DPPH, (b) inhibit lipid peroxidation induced by AAPH, and (c) inhibit soybean lipoxygenase. The synthesized derivatives have shown significant antioxidant activity and have been proved to be very good lipoxygenase inhibitors. Compounds 4b and 4g (IC50 = 4.5 μM) are the most potent within the series followed by compound 6a (IC50 = 5.0 μM). All the synthesized derivatives have been subjected to docking studies related to soybean lipoxygenase. Compound 4g exhibited a docking score of −9.2 kcal/mol and formed hydrophobic interactions with Val126, Tyr525, Lys526, Arg533, and Trp772, as well as a π−cation interaction with Lys526.
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(This article belongs to the Special Issue Advances in Synthesis and Biological Activity of Novel Derivatives Based on Five-Membered Heterocyclic Scaffolds and Their Intermediates—Second Edition)
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An Ab Initio Study of Aqueous Copper(I) Speciation in the Presence of Chloride
by
Daniel C. M. Whynot, Christopher R. Corbeil, Darren J. W. Mercer and Cory C. Pye
Molecules 2025, 30(15), 3147; https://doi.org/10.3390/molecules30153147 (registering DOI) - 27 Jul 2025
Abstract
The determination of multiple energy minima on complex potential energy surfaces is challenging. A systematic desymmetrization procedure was employed to find stationary points on the copper(I) + chloride + water potential energy surface using HF, MP2, and B3LYP methods in conjunction with the
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The determination of multiple energy minima on complex potential energy surfaces is challenging. A systematic desymmetrization procedure was employed to find stationary points on the copper(I) + chloride + water potential energy surface using HF, MP2, and B3LYP methods in conjunction with the 6-31G*, 6-31+G*, and 6-311+G* basis sets. Comparison with experimental results demonstrated that the speciation of copper(I) in the presence of chloride and water may be formulated as [CuCl(H2O)]0, [CuCl2]−, and [CuCl3]2−. Our results indicate that the combination of the MP2 method along with basis sets containing diffuse functions gives excellent agreement with experimental Cu-Cl distances and vibrational frequencies. Poorer results were obtained at the HF levels and/or using the 6-31G* basis set.
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(This article belongs to the Special Issue Influence of Solvent Molecules in Coordination Chemistry)
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Harnessing Nanoporous Hexagonal Structures to Control the Coffee Ring Effect and Enhance Particle Patterning
by
Yu Ju Han, Myung Seo Kim, Seong Min Yoon, Seo Na Yoon, Woo Young Kim, Seok Kim and Young Tae Cho
Molecules 2025, 30(15), 3146; https://doi.org/10.3390/molecules30153146 (registering DOI) - 27 Jul 2025
Abstract
The coffee-ring effect, while harnessed in diverse fields such as biosensing and printing, poses challenges for achieving uniform particle deposition. Controlling this phenomenon is thus essential for precision patterning. This study proposes a novel method to regulate coffee-ring formation by tuning surface wettability
[...] Read more.
The coffee-ring effect, while harnessed in diverse fields such as biosensing and printing, poses challenges for achieving uniform particle deposition. Controlling this phenomenon is thus essential for precision patterning. This study proposes a novel method to regulate coffee-ring formation by tuning surface wettability via integrated nanoporous and hexagonal microstructures. Four distinct surface types were fabricated using UV nanoimprint lithography: planar, porous planar, hexagonal wall, and porous hexagonal wall. The evaporation behavior of colloidal droplets and subsequent particle aggregation were analyzed through contact angle measurements and confocal microscopy. Results demonstrated that nanoscale porosity significantly increased surface wettability and accelerated evaporation, while the hexagonal pattern enhanced droplet stability and suppressed contact line movement. The porous hexagonal surface, in particular, enabled the formation of connected dual-ring patterns with higher particle accumulation near the contact edge. This synergistic design facilitated both stable evaporation and improved localization of particles. The findings provide a quantitative basis for applying patterned porous surfaces in evaporation-driven platforms, with implications for enhanced sensitivity and reproducibility in surface-enhanced Raman scattering (SERS) and other biosensing applications.
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(This article belongs to the Special Issue Novel Porous Materials for Environmental Applications)
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Synthesis of Monothiacalix[4]arene Using the Fragment Condensation Approach
by
Daniel Kortus, Oliver Moravec, Hynek Varga, Michal Churý, Kamil Mamleev, Jan Čejka, Hana Dvořáková and Pavel Lhoták
Molecules 2025, 30(15), 3145; https://doi.org/10.3390/molecules30153145 (registering DOI) - 27 Jul 2025
Abstract
The article describes a simple and scalable preparation of 2-monothiacalix[4]arene 7, the simplest representative of the mixed-bridged (CH2 and S) calix[4]arenes. The synthesis is based on the condensation of linear building blocks (bisphenols), which are relatively readily available, and allows, depending
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The article describes a simple and scalable preparation of 2-monothiacalix[4]arene 7, the simplest representative of the mixed-bridged (CH2 and S) calix[4]arenes. The synthesis is based on the condensation of linear building blocks (bisphenols), which are relatively readily available, and allows, depending on the conditions, the use of two alternative reaction routes that provide macrocycle 7 in high yield. The dynamic behavior of the basic macrocyclic skeleton was investigated using NMR spectroscopy at variable temperatures. High-temperature measurements showed that compound 7 undergoes a cone–cone equilibrium with activation free energy ΔG# of the inversion process of 63 kJ·mol−1. Interestingly, the same barrier for the oxidized sulfone derivative 14 shows a value of 60 kJ·mol−1, indicating weakened hydrogen bonds at the lower rim of the calixarene. The same was also confirmed at low temperatures, when barriers to changing the direction of the cyclic hydrogen bond arrays (flip-flop mechanism) were determined (compare ΔG# = 44 kJ·mol−1 for 7 vs. ΔG# = 40 kJ·mol−1 for 14).
Full article
(This article belongs to the Special Issue Organosulfur and Organoselenium Chemistry II)
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Open AccessReview
Exploring the Therapeutic Value of Some Vegetative Parts of Rubus and Prunus: A Literature Review on Bioactive Profiles and Their Pharmaceutical and Cosmetic Interest
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Andreea Georgiana Roșcan, Irina-Loredana Ifrim, Oana-Irina Patriciu and Adriana-Luminița Fînaru
Molecules 2025, 30(15), 3144; https://doi.org/10.3390/molecules30153144 (registering DOI) - 26 Jul 2025
Abstract
The resulting plant waste from R. idaeus, P. serotina, P. avium, and P. cerasus exhibits a complex chemical composition, depending on the variety from which it originates, with applications in multiple fields such as the food, pharmaceutical or dermato-cosmetic industry
[...] Read more.
The resulting plant waste from R. idaeus, P. serotina, P. avium, and P. cerasus exhibits a complex chemical composition, depending on the variety from which it originates, with applications in multiple fields such as the food, pharmaceutical or dermato-cosmetic industry due to the presence of phytochemical compounds such as flavonoids, flavonols, tannins, cyanogenic glycosides, vitamins, aldehyde, and phenolic acids. The aim of this review was to summarize and analyze the most recent and significant data from literature on the importance of plant waste resulting from the pruning process of trees and shrubs, in the context of applying circular economy principles, with a focus on the pharmacological importance (antimicrobial, antioxidant, anti-inflammatory, anticoagulant, antiviral, and antitumoral) of some bioactive compounds identified in these species. Their applicability in various industries is closely linked to both the bioavailability of the final products and the study of their toxicity. The literature indicates that the isolation of these compounds can be carried out using conventional or modern methods, the last ones being favored due to the increased efficiency of the processes, as well as from the perspective of environmental protection. This review increases the attention and perspective of using plant waste as a linked source of pharmaceutical and dermato-cosmetic agents.
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(This article belongs to the Special Issue Natural Products with Pharmaceutical Activities)
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Preliminary Evaluation of the Nutraceutical Properties in Monovarietal Extra-Virgin Olive Oils and Monitoring Their Stability During Storage
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Lina Cossignani, Ornella Calderini, Antonello Marinotti, Emiliano Orrico, Andrea Domesi, Luisa Massaccesi, Mirko Cucina and Marina Bufacchi
Molecules 2025, 30(15), 3143; https://doi.org/10.3390/molecules30153143 (registering DOI) - 26 Jul 2025
Abstract
In this paper, an in-depth characterization of the composition of extra-virgin olive oil (EVOO) from different cultivars was performed, with the aim of obtaining the fingerprint profile of bioactive constituents and studying the oxidative stability of the samples, both by an accelerated stability
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In this paper, an in-depth characterization of the composition of extra-virgin olive oil (EVOO) from different cultivars was performed, with the aim of obtaining the fingerprint profile of bioactive constituents and studying the oxidative stability of the samples, both by an accelerated stability test and after four months of storage at room temperature. Among the investigated cultivars, some were typical of Umbria (Central Italy), namely Moraiolo, Frantoio, and Dolce Agogia, others of Apulia (Southern Italy), Coratina, Peranzana, and Bella di Cerignola, and others were typical Spanish cultivars cultivated in Umbria (Arbequina and Arbosana). The comparison of the chemical parameters among oils from the different cultivars allowed for their discrimination by multivariate statistical analysis. Some phenolic compounds were mainly responsible for the sample group’s differentiation, with the oils from the Spanish cultivars clearly distinguished from the Umbrian and Apulian sample groups. The processing of the results by chemometric analysis during oil storage and stability tests again allowed the discrimination of the samples analyzed at different storage times. This study contributes to increasing knowledge on olive oils—chemical and nutraceutical properties from specific cultivars, particularly some less studied so far, such as the Bella di Cerignola cultivar, and their changes in their nutraceutical properties during storage.
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(This article belongs to the Special Issue Critical Quality Attributes of Natural Products)
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Anti-Helicobacter pylori and Anti-Inflammatory Sesquiterpenoids from the Rhizoma of Atractylodes macrocephala
by
So Yeong Jeong, Dong-Min Kang, Hyun-Jun Kim, Sang Won Yeon, Hak Hyun Lee, Min Hee Kim, Bang Yeon Hwang, Mi-Jeong Ahn and Mi Kyeong Lee
Molecules 2025, 30(15), 3142; https://doi.org/10.3390/molecules30153142 (registering DOI) - 26 Jul 2025
Abstract
Helicobacter pylori, a spiral-shaped bacterium found in the stomach, is associated with various gastrointestinal and systemic health conditions. Effective suppression of H. pylori is therefore critical for managing gastrointestinal diseases. In a search for natural products with anti-H. pylori activity, the
[...] Read more.
Helicobacter pylori, a spiral-shaped bacterium found in the stomach, is associated with various gastrointestinal and systemic health conditions. Effective suppression of H. pylori is therefore critical for managing gastrointestinal diseases. In a search for natural products with anti-H. pylori activity, the extract of Atractylodes macrocephala rhizoma showed significant inhibitory effects. Chromatographic purification of A. macrocephala extract yielded thirteen compounds, which were identified as ten sesquiterpenes and three polyacetylenes by spectroscopic analysis. The sesquiterpene compounds belong to the eudesmane or eudesmane lactone types and exhibited structure-dependent efficacy. The major eudesmane lactone sesquiterpene, atractylenolide I (1), showed strong inhibitory activity comparable to metronidazole, a positive control, and atractylenolide III (3) also showed good efficacy. However, structural modification such as hydroxylation, methylation, or acetylation of the sesquiterpenes led to reduced activity. In contrast, polyacetylene derivatives displayed only mild inhibitory effects. Further evaluation of the active compounds against three H. pylori strains such as 51, 43504, and 26695 showed that atractylenolide I (1) had potent inhibitory effects against all three strains, with MIC50 values of ranging from 27.3 to 48.6 μM and MIC90 values from 45.4 to 87.2 μM. Atractylenolide III (3) exhibited selective activity against strain 51 with MIC50 value of 89.9 μM. Both compounds also exhibited anti-inflammatory activity with IC90 values of 23.3 and 31.1 μM, respectively, although they showed little effect on urease. This is the first report on the anti-H. pylori efficacy of various constituents of A. macrocephala and comparative analysis of inhibitory effects against several strains, which will provide scientific evidence supporting its potential as therapeutic agent for H. pylori-related infection.
Full article
(This article belongs to the Special Issue Natural Compounds for Disease and Health, 3rd Edition)
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The Inhibitory Effect and Adsorption Properties of Testagen Peptide on Copper Surfaces in Saline Environments: An Experimental and Computational Study
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Aurelian Dobriţescu, Adriana Samide, Nicoleta Cioateră, Oana Camelia Mic, Cătălina Ionescu, Irina Dăbuleanu, Cristian Tigae, Cezar Ionuţ Spînu and Bogdan Oprea
Molecules 2025, 30(15), 3141; https://doi.org/10.3390/molecules30153141 (registering DOI) - 26 Jul 2025
Abstract
Experimental and theoretical studies were applied to investigate the adsorption properties of testagen (KEDG) peptide on copper surfaces in sodium chloride solution and, implicitly, its inhibition efficiency (IE) on metal corrosion. The tetrapeptide synthesized from the amino acids lysine (Lys), glutamic acid (Glu),
[...] Read more.
Experimental and theoretical studies were applied to investigate the adsorption properties of testagen (KEDG) peptide on copper surfaces in sodium chloride solution and, implicitly, its inhibition efficiency (IE) on metal corrosion. The tetrapeptide synthesized from the amino acids lysine (Lys), glutamic acid (Glu), aspartic acid (Asp), and glycine (Gly), named as H-Lys-Glu-Asp-Gly-OH, achieved an inhibition efficiency of around 86% calculated from electrochemical measurements, making KEDG a promising new copper corrosion inhibitor. The experimental data were best fitted to the Freundlich adsorption isotherm. The standard free energy of adsorption ( ) reached the value of −30.86 kJ mol−1, which revealed a mixed action mechanism of tetrapeptide, namely, chemical and physical spontaneous adsorption. The copper surface characterization was performed using optical microscopy and SEM/EDS analysis. In the KEDG presence, post-corrosion, SEM images showed a network surface morphology including microdeposits with an acicular appearance, and EDS analysis highlighted an upper surface layer consisting of KEDG, sodium chloride, and copper corrosion compounds. The computational study based on DFT and Monte Carlo simulation confirmed the experimental results and concluded that the spontaneous adsorption equilibrium establishment was the consequence of the contribution of noncovalent (electrostatic, van der Waals) interactions and covalent bonds.
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(This article belongs to the Section Computational and Theoretical Chemistry)
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Polyphosphoramidate Glycohydrogels with Biorecognition Properties and Potential Antibacterial Activity
by
Zornica Todorova, Oyundari Tumurbaatar, Violeta Mitova, Neli Koseva, Iva Ugrinova, Penka Petrova and Kolio Troev
Molecules 2025, 30(15), 3140; https://doi.org/10.3390/molecules30153140 (registering DOI) - 26 Jul 2025
Abstract
In the present study, for the first time, a biodegradable and non-toxic polyphosphoramidate glycohydrogel (PPAGHGel) was prepared by crosslinking a polyphosphoramidate glycoconjugate (PPAG) with hexamethylene diisocyanate (HMDI) under mild conditions. Poly(oxyethylene H-phosphonate) (POEHP) was used as a precursor and was converted into PPAG
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In the present study, for the first time, a biodegradable and non-toxic polyphosphoramidate glycohydrogel (PPAGHGel) was prepared by crosslinking a polyphosphoramidate glycoconjugate (PPAG) with hexamethylene diisocyanate (HMDI) under mild conditions. Poly(oxyethylene H-phosphonate) (POEHP) was used as a precursor and was converted into PPAG via the Staudinger reaction with glucose-containing azide (2-p-azidobenzamide-2-deoxy-1,3,4,6-tetra-O-trimethylsilyl-α-D-glucopyranose). Then, crosslinking of PPAG was performed to yield PPAGHGel, which was thoroughly characterized. The gel showed a gel fraction of 83%, a swelling degree of 1426 ± 98%, and G″ = 1560 ± 65 Pa. The gel was fully degraded by alkaline phosphatase (400 U/L, pH 9) in 19 days, while hydrolytically, up to 52% degradation was observed under similar conditions. Multivalent studies of the obtained hydrogel with lectin–Concanavalin A were performed. PPAGHGel binds 92% of Concanavalin A within 24 h and the complex remains stable until the amount of glucose reaches 0.3 mM. PPAGHGel acts as a stabilizer for silver nanoparticles (12 nm). SEM shows pores measuring 10 µm (surface) and 0.1 mm (interior) with capillary channels, confirming the gel’s suitability for biosensors, drug delivery, or wound dressings. The cytotoxic (IC50) and cell-adhesive properties of the obtained hydrogel were investigated on human cell lines (HeLa). Antibacterial activity tests were also performed with gel containing silver nanoparticles against skin-associated pathogenic bacteria. The results show that PPAGHGel possesses excellent biocompatibility, non-adhesive properties and antibacterial activity.
Full article
(This article belongs to the Special Issue Synthesis, Characterization and Application of Polymer-Based Materials, 2nd Edition)
Open AccessArticle
Therapeutic Drug Monitoring of Everolimus Using Volumetric Absorptive Microsampling and Quantitative Dried Blood Spot Methods with LC-MS/MS in Adult Solid Organ Transplant Recipients: An Analytical and Clinical Comparative Study
by
Arkadiusz Kocur, Bartosz Olkowski, Mateusz Moczulski, Dorota Miszewska-Szyszkowska, Olga Maria Rostkowska, Katarzyna Polak, Katarzyna Korniluk, Teresa Bączkowska, Magdalena Durlik and Tomasz Pawiński
Molecules 2025, 30(15), 3139; https://doi.org/10.3390/molecules30153139 (registering DOI) - 26 Jul 2025
Abstract
Everolimus (EVE), an mTOR inhibitor, is widely used in solid organ transplantation (SOT) because of its immunosuppressive properties. Due to its narrow therapeutic window and significant pharmacokinetic variability, therapeutic drug monitoring (TDM) is essential for achieving optimal outcomes. We developed and thoroughly validated
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Everolimus (EVE), an mTOR inhibitor, is widely used in solid organ transplantation (SOT) because of its immunosuppressive properties. Due to its narrow therapeutic window and significant pharmacokinetic variability, therapeutic drug monitoring (TDM) is essential for achieving optimal outcomes. We developed and thoroughly validated a robust LC-MS/MS method to measure EVE levels in venous whole blood (WB) and capillary blood collected using two microsampling devices: Mitra™ (volumetric absorptive microsampling, VAMS) and Capitainer® (quantitative dried blood spot, qDBS). The validation followed EMA and IATDMCT guidelines, assessing linearity (1.27–64.80 ng/mL for WB and 0.50–60 ng/mL for VAMS/qDBS), as well as selectivity, accuracy, precision, matrix effects, recovery, stability, and incurred sample reanalysis. Clinical validation involved 66 matched samples from 33 adult SOT recipients. The method demonstrated high accuracy and precision across all matrices, with no significant carryover or matrix interference. Statistical analysis using Passing–Bablok regression and Bland–Altman plots showed excellent agreement between the microsampling methods and the venous reference. Hematocrit effects were tested both in laboratory conditions and on clinical samples and were found to be negligible. This study provides the first comprehensive analytical and clinical validation of the Mitra and Capitainer devices for EVE monitoring. The validated LC-MS/MS microsampling method supports decentralized, patient-centred TDM, offering a reliable alternative to conventional blood sampling in transplant care.
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(This article belongs to the Special Issue Recent Advances in Chromatography for Pharmaceutical Analysis)
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Neuroprotective Evaluation of Murraya Carbazoles: In Vitro and Docking Insights into Their Anti-AChE and Anti-Aβ Activities
by
Himadri Sharma, Niti Sharma and Seong Soo A. An
Molecules 2025, 30(15), 3138; https://doi.org/10.3390/molecules30153138 (registering DOI) - 26 Jul 2025
Abstract
The present study investigated the neuroprotective potential of the Murraya carbazole derivatives murrayanol, mahanimbine, murrayafoline A, and 9-methyl-9H-carbazole-2-carbaldehyde using in silico and in vitro assays. The pharmacokinetic properties and potential toxicity (ADME/T) of the carbazole derivatives were assessed to evaluate their prospects as
[...] Read more.
The present study investigated the neuroprotective potential of the Murraya carbazole derivatives murrayanol, mahanimbine, murrayafoline A, and 9-methyl-9H-carbazole-2-carbaldehyde using in silico and in vitro assays. The pharmacokinetic properties and potential toxicity (ADME/T) of the carbazole derivatives were assessed to evaluate their prospects as up-and-coming drug candidates. Molecular docking was used to investigate the interactions of the compounds with Aβ (PDB: 1IYT, 2BEG, and 8EZE) and AChE receptors (PDB: 4EY7 and 1C2B). The results from the in vitro assays were used to validate and support the findings from the in silico assays. The compounds demonstrated significant inhibition of acetylcholinesterase (AChE), a key target in neurodegenerative disorders. Murrayanol and mahanimbine presented superior inhibitory activity (IC50 ~0.2 μg/mL), outperforming the reference drug, galantamine. The inhibition mechanisms were competitive (murrayanol, murrayafoline A, and 9-methyl-9H-carbazole-2-carbaldehyde) and non-competitive (mahanimbine), supported by low Ki values and strong docking affinities. The compounds also proved effective in reducing Aβ fibrillization (murrayanol: 40.83 ± 0.30%; murrayafoline A: 33.60 ± 0.55%, mahanimbine: 27.68 ± 2.71%). These findings highlight Murraya carbazoles as promising scaffolds for multifunctional agents in AD therapy. Further optimization and mechanistic studies are warranted to advance their development into clinically relevant neuroprotective agents.
Full article
(This article belongs to the Special Issue Bioactive Compounds from Foods for Health Benefits)
Open AccessArticle
Ring Opening upon Valence Shell Excitation in β-Butyrolactone: Experimental and Theoretical Methods
by
Pedro A. S. Randi, Márcio H. F. Bettega, Nykola C. Jones, Søren V. Hoffmann, Małgorzata A. Śmiałek and Paulo Limão-Vieira
Molecules 2025, 30(15), 3137; https://doi.org/10.3390/molecules30153137 (registering DOI) - 26 Jul 2025
Abstract
The valence-shell electronic state spectroscopy of β-butyrolactone (CH3CHCH2CO2) is comprehensively investigated by employing experimental and theoretical methods. We report a novel vacuum ultraviolet (VUV) absorption spectrum in the photon wavelength range from 115 to 320 nm (3.9–10.8
[...] Read more.
The valence-shell electronic state spectroscopy of β-butyrolactone (CH3CHCH2CO2) is comprehensively investigated by employing experimental and theoretical methods. We report a novel vacuum ultraviolet (VUV) absorption spectrum in the photon wavelength range from 115 to 320 nm (3.9–10.8 eV), together with ab initio quantum chemical calculations at the time-dependent density functional (TD-DFT) level of theory. The dominant electronic excitations are assigned to mixed valence-Rydberg and Rydberg transitions. The fine structure in the CH3CHCH2CO2 photoabsorption spectrum has been assigned to C=O stretching, <!-- MathType@Translator@5@5@MathML2 (no namespace).tdl@MathML 2.0 (no namespace)@ -->
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(This article belongs to the Special Issue Advances in Density Functional Theory (DFT) Calculation)
Open AccessArticle
Sustainable Adhesive Formulation and Performance Evaluation of Bacterial Nanocellulose and Aloe Vera for Packaging Applications
by
Urška Vrabič-Brodnjak and Aljana Vidmar
Molecules 2025, 30(15), 3136; https://doi.org/10.3390/molecules30153136 (registering DOI) - 26 Jul 2025
Abstract
The development of bio-based adhesives as sustainable alternatives to synthetic formulations presents a significant opportunity for advancing environmental sustainability in packaging applications. This research aimed to develop and evaluate a bio-based adhesive derived from bacterial nanocellulose (BNC), aloe vera and its mixtures as
[...] Read more.
The development of bio-based adhesives as sustainable alternatives to synthetic formulations presents a significant opportunity for advancing environmental sustainability in packaging applications. This research aimed to develop and evaluate a bio-based adhesive derived from bacterial nanocellulose (BNC), aloe vera and its mixtures as a potential replacement for commercial synthetic adhesives. Aloe vera, selected for its polysaccharide-rich composition, served as a natural polymeric matrix, while BNC contributed reinforcing properties. The adhesive formulations, with and without BNC, were compared to a commercial adhesive to assess their mechanical performance. T-peel and shear tests were conducted on smooth and rough paper substrates to evaluate adhesive strength. The bio-based adhesive incorporating BNC demonstrated superior shear and peel strength on rough substrates due to enhanced mechanical interlocking within the fibrous structure of paper, whereas performance on smooth surfaces was hindered by uneven BNC distribution, reducing adhesive-substrate interaction. Although the commercial adhesive achieved higher absolute maximum force values, the bio-based formulation exhibited comparable mechanical stability under specific conditions. These findings underscore the influence of substrate properties and application methods on adhesive performance, highlighting the potential of bio-based adhesives in packaging applications and the need for further formulation optimization to fully realize their advantages over traditional synthetic adhesives.
Full article
(This article belongs to the Special Issue Bio-Based Polymers for Sustainable Future)
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Determination of Phenylurea Herbicides in Water Samples by Magnet-Integrated Fabric Phase Sorptive Extraction Combined with High Performance Liquid Chromatography
by
Natalia Manousi, Apostolia Tsiasioti, Abuzar Kabir and Erwin Rosenberg
Molecules 2025, 30(15), 3135; https://doi.org/10.3390/molecules30153135 (registering DOI) - 26 Jul 2025
Abstract
In this study, a magnet-integrated fabric phase sorptive extraction (MI-FPSE) protocol was developed in combination with high pressure liquid chromatography—diode array detection (HPLC-DAD) for the simultaneous determination of five phenylurea pesticides (i.e., chlorbromuron, diuron, linuron, metoxuron, monuron) in environmental water samples. To produce
[...] Read more.
In this study, a magnet-integrated fabric phase sorptive extraction (MI-FPSE) protocol was developed in combination with high pressure liquid chromatography—diode array detection (HPLC-DAD) for the simultaneous determination of five phenylurea pesticides (i.e., chlorbromuron, diuron, linuron, metoxuron, monuron) in environmental water samples. To produce the MI-FPSE device, two individual sol-gel coated carbowax 20 M (CW 20 M) cellulose membranes were fabricated and stitched to each other, while a magnetic rod was inserted between them to give the resulting device the ability to spin and serve as a stand-alone microextraction platform. The adsorption and desorption step of the MI-FPSE protocol was optimized to achieve high extraction efficiency and the MI-FPSE-HPLC-DAD method was validated in terms of linearity, sensitivity, selectivity, accuracy, and precision. The limits of detection (LODs) were found to be 0.3 μg L−1. The relative recoveries were 85.2–110.0% for the intra-day and 87.7–103.2% for the inter-day study. The relative standard deviations were better than 13% in all cases. The green character and the practicality of the developed procedure were assessed using ComplexGAPI and Blue Analytical Grade Index metric tools, showing good method performance. Finally, the developed method was successfully used for the analysis of tap, river, and lake water samples.
Full article
(This article belongs to the Special Issue Analytical Methods for Food and Environmental Pollutants: Current and Future Perspectives)
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Open AccessArticle
Amino Acid Substitutions in Bacteriocin Lactolisterin BU Reveal Functional Domains Involved in Biological Activity Against Staphylococcus aureus
by
Lazar Gardijan, Milka Malešević, Miroslav Dinić, Aleksandar Pavić, Nikola Plačkić, Goran Jovanović and Milan Kojić
Molecules 2025, 30(15), 3134; https://doi.org/10.3390/molecules30153134 (registering DOI) - 26 Jul 2025
Abstract
The emergence of multidrug-resistant pathogens has driven the development of novel antimicrobial peptides (AMPs) as therapeutic alternatives. Lactolisterin LBU (LBU) is a bacteriocin with promising activity against Gram-positive bacteria, including Staphylococcus aureus. In this study, we designed and evaluated a panel of
[...] Read more.
The emergence of multidrug-resistant pathogens has driven the development of novel antimicrobial peptides (AMPs) as therapeutic alternatives. Lactolisterin LBU (LBU) is a bacteriocin with promising activity against Gram-positive bacteria, including Staphylococcus aureus. In this study, we designed and evaluated a panel of amino acid variants of LBU to investigate domain–activity relationships and improve activity. Peptides were commercially synthesized, and their effect was evaluated for minimal inhibitory concentration (MIC), minimal bactericidal concentration (MBC), hemolytic activity, cytotoxicity, in vivo toxicity, and virulence modulation. AlphaFold3 structural prediction of LBU revealed a four-helix topology with amphipathic and hydrophobic segments. Helical wheel projections identified helices I and IV as amphipathic, suggesting their potential involvement in membrane interaction and activity. Glycine-to-alanine substitutions at helix I markedly increased antimicrobial activity but altered toxicity profiles. In contrast, changes at helix junctions and kinks reduced antimicrobial activity. We also showed differential regulation of virulence genes upon sub-MIC treatment. Overall, rational substitution enabled identification of residues critical for activity and toxicity, providing insights into therapeutic tuning of lactolisterin-based peptides.
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(This article belongs to the Special Issue Chemical Design and Synthesis of Antimicrobial Drugs)
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Open AccessArticle
The Pharmacological Evidences for the Involvement of AhR and GPR35 Receptors in Kynurenic Acid-Mediated Cytokine and Chemokine Secretion by THP-1-Derived Macrophages
by
Katarzyna Sawa-Wejksza, Jolanta Parada-Turska and Waldemar Turski
Molecules 2025, 30(15), 3133; https://doi.org/10.3390/molecules30153133 (registering DOI) - 26 Jul 2025
Abstract
Kynurenic acid (KYNA), a tryptophan metabolite, possesses immunomodulatory properties, although the molecular mechanism of this action has not yet been resolved. In the present study, the effects of KYNA on the secretion of selected cytokines and chemokines by macrophages derived from the human
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Kynurenic acid (KYNA), a tryptophan metabolite, possesses immunomodulatory properties, although the molecular mechanism of this action has not yet been resolved. In the present study, the effects of KYNA on the secretion of selected cytokines and chemokines by macrophages derived from the human THP-1 cell line are investigated. Furthermore, the involvement of the aryl hydrocarbon receptor (AhR) and the G protein-coupled receptor 35 (GPR35) in mediating the effects of KYNA was examined. In lipopolysaccharide (LPS)-stimulated THP-1-derived macrophages, KYNA significantly reduced IL-6 and CCL-2, but increased IL-10 and M-CSF levels. AhR antagonist CH-223191 reduced the KYNA influence on IL-6, CCL-2, and M-CSF production, while the GPR35 antagonist, ML-145, blocked KYNA-induced IL-10 production. Furthermore, it was shown that THP-1 derived macrophages were capable of synthesizing and releasing KYNA and that its production was increased in the presence of LPS. These findings suggest that THP-1-derived macrophages are a source of KYNA and that KYNA modulates inflammatory responses predominantly through AhR and GPR35 receptors. Our study provides further evidence for the involvement of macrophages in immunomodulatory processes that are dependent on AhR and GPR35 receptors, as well as the potential role of KYNA in these phenomena.
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(This article belongs to the Section Medicinal Chemistry)
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Open AccessFeature PaperReview
Synthetic and Functional Engineering of Bacteriophages: Approaches for Tailored Bactericidal, Diagnostic, and Delivery Platforms
by
Ola Alessa, Yoshifumi Aiba, Mahmoud Arbaah, Yuya Hidaka, Shinya Watanabe, Kazuhiko Miyanaga, Dhammika Leshan Wannigama and Longzhu Cui
Molecules 2025, 30(15), 3132; https://doi.org/10.3390/molecules30153132 (registering DOI) - 25 Jul 2025
Abstract
Bacteriophages (phages), the most abundant biological entities on Earth, have long served as both model systems and therapeutic tools. Recent advances in synthetic biology and genetic engineering have revolutionized the capacity to tailor phages with enhanced functionality beyond their natural capabilities. This review
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Bacteriophages (phages), the most abundant biological entities on Earth, have long served as both model systems and therapeutic tools. Recent advances in synthetic biology and genetic engineering have revolutionized the capacity to tailor phages with enhanced functionality beyond their natural capabilities. This review outlines the current landscape of synthetic and functional engineering of phages, encompassing both in-vivo and in-vitro strategies. We describe in-vivo approaches such as phage recombineering systems, CRISPR-Cas-assisted editing, and bacterial retron-based methods, as well as synthetic assembly platforms including yeast-based artificial chromosomes, Gibson, Golden Gate, and iPac assemblies. In addition, we explore in-vitro rebooting using TXTL (transcription–translation) systems, which offer a flexible alternative to cell-based rebooting but are less effective for large genomes or structurally complex phages. Special focus is given to the design of customized phages for targeted applications, including host range expansion via receptor-binding protein modifications, delivery of antimicrobial proteins or CRISPR payloads, and the construction of biocontained, non-replicative capsid systems for safe clinical use. Through illustrative examples, we highlight how these technologies enable the transformation of phages into programmable bactericidal agents, precision diagnostic tools, and drug delivery vehicles. Together, these advances establish a powerful foundation for next-generation antimicrobial platforms and synthetic microbiology.
Full article
Open AccessArticle
Chrysin-Loaded Extracellular Vesicles Attenuate LPS-Induced Neuroinflammation in BV2 Microglial Cells In Vitro: A Novel Neuroprotective Strategy
by
Francesca Martina Filannino, Raffaella Soleti, Melania Ruggiero, Maria Ida de Stefano, Maria Antonietta Panaro, Dario Domenico Lofrumento, Teresa Trotta, Angela Bruna Maffione, Tarek Benameur, Antonia Cianciulli, Rosa Calvello, Federico Zoila and Chiara Porro
Molecules 2025, 30(15), 3131; https://doi.org/10.3390/molecules30153131 - 25 Jul 2025
Abstract
Neuroinflammation, driven by activated microglia, contributes to the progression of neurodegenerative diseases. Extracellular vesicles mediate intercellular communication and influence immune responses. Chrysin, a natural flavone found in fruits and propolis, has demonstrated anti-inflammatory effects. This study explored the immunomodulatory potential of chrysin-loaded EVs
[...] Read more.
Neuroinflammation, driven by activated microglia, contributes to the progression of neurodegenerative diseases. Extracellular vesicles mediate intercellular communication and influence immune responses. Chrysin, a natural flavone found in fruits and propolis, has demonstrated anti-inflammatory effects. This study explored the immunomodulatory potential of chrysin-loaded EVs (EVs-Chry) derived from BV2 microglial cells. BV2 cells were treated with chrysin for 24 h to assess cytotoxicity and proliferation. EVs were isolated from treated and untreated cells, characterized by nanoparticle tracking analysis, and applied to naïve BV2 cells prior to LPS stimulation. Effects on cell morphology, migration, cytokine expression (IL-1β, IL-6), inflammasome activity (caspase-1), and apoptosis-related protein Bcl-xL were investigated. Our results show that EVs-Chry significantly reduced LPS-induced cell proliferation, restored resting microglial morphology, and reduced migratory capacity. Furthermore, co-treatment with EVs-Chry and LPS reduced pro-inflammatory cytokines such as IL-1β, IL-6, and caspase-1 expression while enhancing anti-apoptotic Bcl-xL levels, indicating a shift toward an anti-inflammatory, neuroprotective micro-glial phenotype. Together, our results demonstrated that EVs-Chry have neuroprotective effects on LPS-induced microglial activation and modulate microglial responses to inflammatory stimuli, attenuating pro-inflammatory signaling and promoting cellular homeostasis. These findings support the therapeutic potential of EVs-Chry in the context of neuroinflammatory and neurodegenerative disorders.
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(This article belongs to the Special Issue Bioactive Compounds and Small Molecules with Neuroprotective and Anti-Inflammatory Functions)
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Open AccessArticle
A Turn-On Fluorescence Sensor Based on Guest-Induced Luminescence Ru(bpy)32+@UiO-66 for the Detection of Organophosphorus Pesticides
by
Jun Li, Jianlan Deng, Qian Tao, Chenyu Yan, Yuxuan Liu, Jianxiao Yang and Zhong Cao
Molecules 2025, 30(15), 3130; https://doi.org/10.3390/molecules30153130 - 25 Jul 2025
Abstract
Luminescent metal–organic frameworks (MOFs) are used for the detection of organophosphorus pesticides (OPs) due to their large surface area and pore volume as well as their special optical properties. However, most self-luminescent MOFs are not only complex to synthesize and unstable in water
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Luminescent metal–organic frameworks (MOFs) are used for the detection of organophosphorus pesticides (OPs) due to their large surface area and pore volume as well as their special optical properties. However, most self-luminescent MOFs are not only complex to synthesize and unstable in water but also feature a “turn-off” sensing system, which has highly restricted their practical applications in OP detection. Herein, a “turn-on” fluorescence sensor based on the guest-induced luminescence MOF Ru(bpy)32+@UiO-66 was constructed, which realized the sensitive detection of OPs through a dual-enzyme system for the first time. Compared with self-luminescent MOFs, Ru(bpy)32+@UiO-66 was not only more easily synthesized but also had higher chemical and photostability in water. In this strategy, by means of the hydrolysis of AChE and ChOx, H2O2 will be produced, which can oxidize Fe2+ to Fe3+, thereby quenching the fluorescence of Ru(bpy)32+@UiO-66. In the presence of OPs, the activity of AChE can be inhibited, resulting in the inability to generate H2O2 and Fe3+, which will turn on the fluorescence signal of Ru(bpy)32+@UiO-66. As a result, the Ru(bpy)32+@UiO-66 sensing system not only had high sensitivity for OPs detection but also possessed a satisfactory detection recovery rate for parathion-methyl in real samples, which provides a new approach for OP detection in food safety as well as environmental monitoring.
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(This article belongs to the Special Issue Inorganic Photoelectric Functional Materials: Design, Synthesis and Applications)
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Open AccessArticle
Fast, Simple and Accurate Method for Simultaneous Determination of α-Lipoic Acid and Selected Thiols in Human Saliva by Capillary Electrophoresis with UV Detection and pH-Mediated Sample Stacking
by
Urszula Sudomir, Justyna Piechocka, Rafał Głowacki and Paweł Kubalczyk
Molecules 2025, 30(15), 3129; https://doi.org/10.3390/molecules30153129 - 25 Jul 2025
Abstract
This report presents the first method for simultaneous determination of the 2-S-lepidinium derivatives of total α-lipoic acid (LA), homocysteine (Hcy), cysteinylglycine (CysGly), and cysteine (Cys) in human saliva, using capillary electrophoresis with pH-mediated sample stacking and ultraviolet detection (CE-UV) at 355
[...] Read more.
This report presents the first method for simultaneous determination of the 2-S-lepidinium derivatives of total α-lipoic acid (LA), homocysteine (Hcy), cysteinylglycine (CysGly), and cysteine (Cys) in human saliva, using capillary electrophoresis with pH-mediated sample stacking and ultraviolet detection (CE-UV) at 355 nm. Electrophoretic separation is carried out at 20 kV and 25 °C using a standard fused silica capillary (effective length 91.5 cm, inner diameter 75 µm). The background electrolyte consists of 0.5 mol/L lithium acetate buffer, adjusted to pH 3.5 with 0.5 mol/L acetic acid. The limit of quantification was determined to be 1 µmol/L for LA and 0.17 µmol/L for Hcy, 0.11 µmol/L for CysGly, and 0.10 µmol/L for Cys in saliva samples. Calibration curves demonstrated linearity over the concentration range of 3 to 30 µmol/L for all analytes. Method precision did not exceed 4.7%, and accuracy ranged from 87.9% to 114.0%. The developed method was successfully applied to saliva samples from eleven apparently healthy volunteers to determine the content of LA, Hcy, CysGly, and Cys. The Hcy, CysGly, and Cys concentrations ranged from 0.55 to 13.76 µmol/L, 0.89 to 9.29 µmol/L, and 1.73 to 12.99 µmol/L, respectively. No LA-derived peaks were detected in the native saliva samples.
Full article
(This article belongs to the Section Analytical Chemistry)
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